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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12411791_12412104_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12411791 - 12412104
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
ATTACAGTGAGG
Flanking Amino Acid:
FQGVLECNSEGSAGKVLWNG
Intron Amino Acid Position:
1018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
82.6
24.8
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
37.7
-1.4
3
49
47.2
Minor BPS
40.1
-0.9
2.4
50.71
43.4

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290