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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12412466_12412743_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12412466 - 12412743
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCTCAATG
Flanking Amino Acid:
IHQATILPKKGSVQLEVRIM
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
38.7
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
83.3
0.75
0.8
77.8
36
Minor 5ss
26.1
-2.7
2.9
22.8
37.4
Minor BPS
69.3
0.47
1.6
71.5
41.9

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290