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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12417354_12418509_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12417354 - 12418509
Intron Length:
1156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTGTCCTGAACT
Flanking Amino Acid:
KLPPGGMAAVGLTWEECKQR
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.8
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
82.9
0.74
0.7
77.1
24.8
Minor 5ss
38.1
-1.3
3.1
47.2
43.7
Minor BPS
81.4
1.06
1.3
93.2
35

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290