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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12418700_12419920_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12418700 - 12419920
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GAATCATTAATT
Flanking Amino Acid:
NAFVGVAAVQIAQIDMLKAA
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
74.3
37.2
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
86
0.81
0.7
80.5
24.8
Minor 5ss
36.9
-1.5
2.6
45.1
42.8
Minor BPS
65.9
0.58
1.6
76.68
39.2

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290