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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12420109_12420461_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12420109 - 12420461
Intron Length:
353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTATCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TCTTGCTTATCT
Flanking Amino Acid:
SGRPLWYICSGMGTQWKGMG
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
71.6
40.2
Major BPS
64.7
0.37
1
73
31.5
Major PPT
79.9
0.67
0.9
73.2
36.9
Minor 5ss
33.1
-1.9
3.1
41.9
44.7
Minor BPS
63.5
0.5
2.1
83.49
43.8

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290