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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12423819_12424067_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12423819 - 12424067
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTACTT
Flanking Amino Acid:
YVETHGTGTKVGDPQEVNGI
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.7
0.65
0.8
70.5
35.6
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
48
-0
2.2
72.41
45

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290