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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12424184_12424834_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12424184 - 12424834
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCCTT
5'SS Class:
major
3'SS Sequence:
ATTTTGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GCAATTTTGATT
Flanking Amino Acid:
GSNTDGFKEQGVTFPSGDMQ
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.8
43.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.9
0.58
0.9
67.5
43
Minor 5ss
37
-1.5
3.5
55.3
48.9
Minor BPS
50.1
0.08
1.2
59.92
38

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290