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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12427938_12428721_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12427938 - 12428721
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TAATCTGTGATA
Flanking Amino Acid:
VTEDDRRWKPGMYGLPKRNG
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
49.7
-0
2
63.18
37.4

Associated Gene:

Gene:
FASN
Ensembl Gene ID:
ENSAPLG00000002703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002873
12392579 - 12428868
36290