About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12481818_12483029_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12481818 - 12483029
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTACCTGGAAT
Flanking Amino Acid:
MAVLIGPPSAGKLLDVTRRY
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
79
0.72
1
78.4
31.2
Major PPT
89.8
0.89
0.7
88.4
28.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
61.9
0.46
1.7
82.46
38.2

Associated Gene:

Gene:
SLC16A3
Ensembl Gene ID:
ENSAPLG00000004860
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038225
12479864 - 12484316
4453
ENSAPLT00000005015
12479864 - 12488639
8776