About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12500276_12500646_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12500276 - 12500646
Intron Length:
371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATGTAATT
Flanking Amino Acid:
PTPLTPASHAANTSPRPVSG
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
85.7
0.8
0.7
80.7
30.7
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
47.5
-0.1
2.1
68.97
42.6

Associated Gene:

Gene:
CSNK1D
Ensembl Gene ID:
ENSAPLG00000004969
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005141
12493269 - 12511478
18210