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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12500819_12501371_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12500819 - 12501371
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TCCTGACCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
AGTCCCTGAAGT
Flanking Amino Acid:
YVFDWNMLKFGASRATEDAE
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
72.6
38.2
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
64.9
0.34
0.8
58.7
31.9
Minor 5ss
34.6
-1.8
2.9
48.3
41.7
Minor BPS
56.9
0.3
1.8
74.15
41.9

Associated Gene:

Gene:
CSNK1D
Ensembl Gene ID:
ENSAPLG00000004969
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005141
12493269 - 12511478
18210