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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12503767_12504256_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12503767 - 12504256
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAAC
5'SS Class:
major
3'SS Sequence:
CTTCTGTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTTTCTCATCT
Flanking Amino Acid:
KTVLLLADQMISRIEYIHSK
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
67.8
37.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75
0.56
0.9
73.6
36
Minor 5ss
32.5
-2
3.2
39.7
40.4
Minor BPS
60.5
0.41
1.8
80.8
40.8

Associated Gene:

Gene:
CSNK1D
Ensembl Gene ID:
ENSAPLG00000004969
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005141
12493269 - 12511478
18210