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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12504406_12505884_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12504406 - 12505884
Intron Length:
1479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCGAA
5'SS Class:
major
3'SS Sequence:
TTCTTTGTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATACTGAATA
Flanking Amino Acid:
SKIYKMMQGGVGIPTIKWCG
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.5
38.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
87.3
0.84
0.8
80.2
37.3
Minor 5ss
34.3
-1.8
3.6
45.7
49.5
Minor BPS
63.8
0.43
1.6
74.63
36.4

Associated Gene:

Gene:
CSNK1D
Ensembl Gene ID:
ENSAPLG00000004969
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005141
12493269 - 12511478
18210