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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_12505996_12511402_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12505996 - 12511402
Intron Length:
5407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TTTCCCGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
AATGTTTTATTT
Flanking Amino Acid:
GSGSFGDIYLGTDIAAGEEV
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.4
0.66
0.8
77.5
31.2
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
50.4
0.09
1.6
66.33
39.3

Associated Gene:

Gene:
CSNK1D
Ensembl Gene ID:
ENSAPLG00000004969
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005141
12493269 - 12511478
18210