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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1375192_1375245_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1375192 - 1375245
Intron Length:
54

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCACTGCCC
5'SS Class:
weak_major
3'SS Sequence:
CTCTGCCCCTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGGTGAT
U12 Branch Point Sequence:
GAGACCTTCAGA
Flanking Amino Acid:
QRLAALGSAVAAWGHPGSIS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.5
0.2
1.3
54.9
40.7
Major BPS
57.3
0.18
1.3
48.8
46.3
Major PPT
50.8
0.02
1.6
61.7
35
Minor 5ss
20.3
-3.4
4
25.3
36.8
Minor BPS
46.3
-0.3
2.1
53.97
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023977
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017833
1368871 - 1375303
6433