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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1578792_1580414_R

Intron Information:

Intron Rank:
134958
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1578792 - 1580414
Intron Length:
1623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGAAACACATCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCCTTTTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
54.3
0.1
1.1
49.9
43.2
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
51.5
0.03
1.5
59.4
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019956
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030124
1578642 - 1581648
3007