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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1580565_1581571_R

Intron Information:

Intron Rank:
134959
Intron Class:
major
Intron Phase:
Intron Coordinates:
1580565 - 1581571
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTCCCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
78.3
32.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.4
0.75
0.8
83.3
26.9
Minor 5ss
37.9
-1.4
3.2
51.5
45.7
Minor BPS
49.2
-0
2.1
72.11
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019956
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030124
1578642 - 1581648
3007