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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1642358_1642835_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1642358 - 1642835
Intron Length:
478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
CTTCCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTGTGCTGACAC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
80.6
0.69
0.7
72.7
32.1
Minor 5ss
36.5
-1.5
2.7
41.8
38.1
Minor BPS
45.1
-0.3
2.2
60.29
44.6

Associated Gene:

Gene:
PIRT
Ensembl Gene ID:
ENSAPLG00000023353
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035965
1641644 - 1649017
7374