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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1642969_1647748_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1642969 - 1647748
Intron Length:
4780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TAGTCCTGCACT
Flanking Amino Acid:
MVSSSDPVTME
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
72.3
37.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.1
0.68
0.8
77.7
29.4
Minor 5ss
33.2
-1.9
3.2
40.6
40.8
Minor BPS
59.4
0.38
2
78.23
43.7

Associated Gene:

Gene:
PIRT
Ensembl Gene ID:
ENSAPLG00000023353
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035965
1641644 - 1649017
7374