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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1683084_1684216_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1683084 - 1684216
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCACAT
U12 Branch Point Sequence:
CTATCCTGAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.8
38.1
Major BPS
53.7
0.09
1.1
60.7
37.6
Major PPT
77.2
0.61
0.9
70.4
36.3
Minor 5ss
37.9
-1.4
2.9
40.9
45.3
Minor BPS
58.8
0.27
1.8
69.46
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018403
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034085
1676929 - 1685934
9006