About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1707386_1707770_R


Intron Information:

Intron Rank:
38

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1707386 - 1707770

Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGGCAGT

5'SS Class:
strong_major

3'SS Sequence:
TTTTGTATTTTAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTGTAT

U12 Branch Point Sequence:
GGTTTTGTATTT

Flanking Amino Acid:
RRHADQYKEQMEKANARMKQ

Intron Amino Acid Position:
1872

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
80.6
0.72
1
72.7
44.5

Major BPS
71.5
0.53
1.4
71.7
44.6

Major PPT
83.8
0.76
0.8
82.4
34

Minor 5ss
39.7
-1.2
3.2
57.4
46.9

Minor BPS
45.4
-0.2
2.1
64.27
41

Associated Gene:

Gene:
MYH10

Ensembl Gene ID:

Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1704714 - 1806604
101891

1704714 - 1806604
101891