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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1708897_1709157_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1708897 - 1709157
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTCTTGAAGT
Flanking Amino Acid:
QLEEQLEQEAK*
Intron Amino Acid Position:
1835

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
83
0.82
0.8
82
24.9
Major PPT
76.1
0.59
1
72.2
37.9
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
60
0.39
1.7
76.52
39.8

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016287
1708325 - 1806571
98247