About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1709367_1709455_R


Intron Information:

Intron Rank:
36

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
1709367 - 1709455

Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTGTGAATC

5'SS Class:
strong_major

3'SS Sequence:
TCTCCTCTGGAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
AAATGAT

U12 Branch Point Sequence:
CTAGCACCAAAT

Flanking Amino Acid:
NERFRKTTLQVDTLNSELAG

Intron Amino Acid Position:
1766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.2
0.74
0.9
76.8
31.7

Major BPS
68
0.45
1
57.8
39

Major PPT
64.4
0.33
1.1
67.4
32.8

Minor 5ss
38.7
-1.3
3
51.4
45.5

Minor BPS
39.6
-0.7
2.1
56.67
44.8

Associated Gene:

Gene:
MYH10

Ensembl Gene ID:

Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1704714 - 1806604
101891

1704714 - 1806604
101891

1708325 - 1806571
98247