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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1712926_1714290_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1712926 - 1714290
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCTA
5'SS Class:
major
3'SS Sequence:
CTTGATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AGTGTCTTGATT
Flanking Amino Acid:
EEKKRMLVKQVRELEAELED
Intron Amino Acid Position:
1598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.4
37.3
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
78
0.63
0.9
71.7
37.9
Minor 5ss
45.6
-0.5
2.8
58.6
40.3
Minor BPS
61.7
0.45
1.4
73.13
38.1

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247