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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1718274_1719345_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1718274 - 1719345
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
GTTACCTTTATA
Flanking Amino Acid:
ELAEKANKLQNELDNVSSLL
Intron Amino Acid Position:
1287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
79.6
0.67
0.9
72.7
37.5
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
63.9
0.43
1.7
73.06
38.3

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247
ENSAPLT00000038064
1704714 - 1806604
101891