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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1722303_1724449_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1722303 - 1724449
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTCACTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TCTATGTCACTT
Flanking Amino Acid:
KQEMMITDLEERLKKEEKTR
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
79.2
29.8
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
69.4
0.44
0.9
61.3
39.9
Minor 5ss
43.5
-0.7
2.7
59
45.7
Minor BPS
40.8
-0.6
2.3
59.71
44.5

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247