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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1725321_1726657_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1725321 - 1726657
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAC
U12 Branch Point Sequence:
AAATACACACAT
Flanking Amino Acid:
EKKKMQGHIQDLEEQLDEEE
Intron Amino Acid Position:
954

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
60
0.25
1
66.9
29.8
Major PPT
83.4
0.75
0.7
76
32.5
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
37.7
-0.8
2
52.88
40.7

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247