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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1727957_1728038_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1727957 - 1728038
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTAT
5'SS Class:
major
3'SS Sequence:
CAAAATTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CATTTCAAAATT
Flanking Amino Acid:
HWQWWRVFTKVKPLLQVTRQ
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
77.8
32.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.5
0.44
1
61.7
43.5
Minor 5ss
44.3
-0.6
2.5
58.6
46
Minor BPS
49.2
0.02
1.9
69.2
42.2

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247