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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1730126_1732597_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1730126 - 1732597
Intron Length:
2472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ACTTATTTACTT
Flanking Amino Acid:
DNITGLHDPPVDRIVGLDQV
Intron Amino Acid Position:
643

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
0.9
70.9
35
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
80.7
0.69
0.8
73.2
37.2
Minor 5ss
26
-2.8
3
31.8
42.6
Minor BPS
53.3
0.18
1.8
70.58
41.2

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891