About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1738096_1738508_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1738096 - 1738508
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
GTTGTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACGAAT
U12 Branch Point Sequence:
TCTTGCTTACGA
Flanking Amino Acid:
LDIAGFEIFELNSFEQLCIN
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
61.8
0.29
1.3
69.9
35.3
Major PPT
81.8
0.72
0.8
77.2
37.1
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
48.8
-0
2.3
66.36
46.4

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247