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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1771801_1793369_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1771801 - 1793369
Intron Length:
21569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
AGACCTATAACC
Flanking Amino Acid:
SESAYRCMLQDREDQSILCT
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
53
0.07
1.6
61.44
36.9

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247