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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1793527_1806226_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1793527 - 1806226
Intron Length:
12700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TATTTACTAACA
Flanking Amino Acid:
KDRYYSGLIYTYSGLFCVVI
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
57.6
0.24
1.9
74.56
36.2

Associated Gene:

Gene:
MYH10
Ensembl Gene ID:
ENSAPLG00000015386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038064
1704714 - 1806604
101891
ENSAPLT00000034869
1704714 - 1806604
101891
ENSAPLT00000016287
1708325 - 1806571
98247