Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1861117_1861650_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1861117 - 1861650

Intron Length:

534

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGCTG

5'SS Class:

major

3'SS Sequence:

GATACCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCTAT

U12 Branch Point Sequence:

GATACCTCAACA

Flanking Amino Acid:

YMKKSRRVLQENDKLRTQAL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

57.8

46.6

Major BPS

56.2

0.15

1.3

54.7

42.5

Major PPT

62.5

0.28

55.4

39.7

Minor 5ss

32.6

-2

3.7

46.8

48.5

Minor BPS

64.2

0.44

1.6

71.27

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015857

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016532

1860373 - 1865255

4883