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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1861849_1862302_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1861849 - 1862302
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGCTTG
5'SS Class:
major
3'SS Sequence:
CCCTGTACTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTTTACTAAGCC
Flanking Amino Acid:
YLEDVVKTSHFEEIQKVIWR
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.3
65.8
42.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
72.4
0.5
0.9
65.5
34.8
Minor 5ss
43.4
-0.7
3
54.7
43.2
Minor BPS
49.9
-0
2.1
68.36
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015857
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016532
1860373 - 1865255
4883