Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1874733_1874999_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

1874733 - 1874999

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAGTGTTC

5'SS Class:

major

3'SS Sequence:

CTTTTCTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCCTAT

U12 Branch Point Sequence:

GGTTTCCTATTT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.4

0.32

1.1

59.4

40.4

Major BPS

68.8

0.47

1.3

66.7

41.7

Major PPT

84.2

0.77

0.7

77.1

31.6

Minor 5ss

40.1

-1.1

3.6

55.1

44.7

Minor BPS

49.3

0.03

1.9

69.89

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015933

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016618

1874439 - 1879987

5549