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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_191835_198713_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
191835 - 198713
Intron Length:
6879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACCTTCTAACT
Flanking Amino Acid:
RRQSKESSLTINCVTFPHPD
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.7
83.2
25.4
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
53.8
0.2
1.7
70.77
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003204
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003294
191730 - 224740
33011