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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1947223_1949945_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1947223 - 1949945
Intron Length:
2723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
CTCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
ATATCCCCAGCT
Flanking Amino Acid:
GSAFLLRSPLWISFQRLVRT
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
45.7
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
77.1
0.61
0.7
69.1
31.5
Minor 5ss
39.8
-1.1
3
51.2
45.1
Minor BPS
48.6
-0
2.1
73.11
43

Associated Gene:

Gene:
PIK3R5
Ensembl Gene ID:
ENSAPLG00000016065
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016771
1935524 - 1951510
15987