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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_1951404_1977281_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1951404 - 1977281
Intron Length:
25878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTATTC
5'SS Class:
major
3'SS Sequence:
GCTTCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
TGTGGGTCACCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
70.5
34.3
Major BPS
53
0.08
1.4
63
42.7
Major PPT
80.1
0.68
0.8
73.3
31.6
Minor 5ss
48.7
-0.1
2.7
68.2
42.9
Minor BPS
36.6
-1
2.6
51.68
46.1

Associated Gene:

Gene:
PIK3R5
Ensembl Gene ID:
ENSAPLG00000016065
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036385
1935228 - 1977437
42210