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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2050363_2066164_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
2050363 - 2066164
Intron Length:
15802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
CCGCCGGGCGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCCT
U12 Branch Point Sequence:
TGCTCCTCCCCG
Flanking Amino Acid:
KPISHRKACKEIPAAPPTTA
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
31.6
-1.1
4.2
65.3
43.7
Major PPT
51.9
0.04
1
44.6
36.4
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
36.3
-1.1
3.6
51.98
48.1

Associated Gene:

Gene:
NTN1
Ensembl Gene ID:
ENSAPLG00000009859
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031625
2004601 - 2085996
81396