Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2063614_2066164_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2063614 - 2066164

Intron Length:

2551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAGGTGGA

5'SS Class:

major

3'SS Sequence:

CCGCCGGGCGCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCTCCT

U12 Branch Point Sequence:

TGCTCCTCCCCG

Flanking Amino Acid:

QSRSPIAPCIKIPAAPPTTA

Intron Amino Acid Position:

557

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

1.1

66.1

40.1

Major BPS

31.6

-1.1

4.2

65.3

43.7

Major PPT

51.9

0.04

44.6

36.4

Minor 5ss

32.4

-2

3.4

39.3

44.5

Minor BPS

36.3

-1.1

3.6

51.98

48.1

Associated Gene:

Gene:

NTN1

Ensembl Gene ID:

ENSAPLG00000009859

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010264

2004601 - 2086996

82396