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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_211627_214787_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
211627 - 214787
Intron Length:
3161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
ATTACCACCATT
Flanking Amino Acid:
AEVHLKFSSKLQSEVEKPLL
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
44.7
-0.3
2.2
68.66
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003204
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003294
191730 - 224740
33011