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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2128135_2171792_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2128135 - 2171792
Intron Length:
43658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GGGAGATTAATG
Flanking Amino Acid:
EIGNELDEQNEIIDDLTNLV
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
42.8
-0.6
2
42.89
42.2

Associated Gene:

Gene:
STX8
Ensembl Gene ID:
ENSAPLG00000009824
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010229
2092715 - 2186836
94122