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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_214917_216895_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
214917 - 216895
Intron Length:
1979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAATA
5'SS Class:
major
3'SS Sequence:
TAATTAATCCAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTCTTTAATT
Flanking Amino Acid:
LASRYAAVEKARKALTERQK
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
0.9
76.9
33.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
57.7
0.17
1.1
54.6
43.6
Minor 5ss
30.2
-2.3
3.2
39.2
46.2
Minor BPS
84.4
1.16
1
91.31
32.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003204
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003294
191730 - 224740
33011