Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_217020_220599_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

217020 - 220599

Intron Length:

3580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TGAACTTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAA

U12 Branch Point Sequence:

CTGTTGTGAACT

Flanking Amino Acid:

KKARRKSTQAGDDLMRCVDL

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.6

1.1

0.7

87.9

25.6

Major BPS

72.1

0.55

1.2

63.4

44.3

Major PPT

76.9

0.6

0.9

73.4

41.6

Minor 5ss

-1.5

2.6

46.5

41.8

Minor BPS

49.8

0.06

2.2

71.85

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003204

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003294

191730 - 224740

33011