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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2171886_2173573_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2171886 - 2173573
Intron Length:
1688

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTGATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCACATAATT
Flanking Amino Acid:
IRQQQRRIIEEQDAGLDALS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
68.4
36.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.7
0.58
1
70.4
39.7
Minor 5ss
29.1
-2.4
3.4
37.5
47.2
Minor BPS
61.7
0.45
1.8
83.94
36.2

Associated Gene:

Gene:
STX8
Ensembl Gene ID:
ENSAPLG00000009824
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010229
2092715 - 2186836
94122