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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2173699_2182981_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2173699 - 2182981
Intron Length:
9283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAC
5'SS Class:
strong_major
3'SS Sequence:
AAATTATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTATTTAATG
Flanking Amino Acid:
RNEGPEPDVTRSSLMTGGIK
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
67.7
37.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.1
0.56
1
71
43.4
Minor 5ss
38.3
-1.3
3
50.3
46.3
Minor BPS
62.3
0.25
1.5
63.94
38

Associated Gene:

Gene:
STX8
Ensembl Gene ID:
ENSAPLG00000009824
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010229
2092715 - 2186836
94122