Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2194807_2195164_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2194807 - 2195164

Intron Length:

358

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTCAC

5'SS Class:

major

3'SS Sequence:

TCCTCCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGCTCAC

U12 Branch Point Sequence:

CGGGGCTCACCG

Flanking Amino Acid:

FGTGECFVFTVHPEMERYEW

Intron Amino Acid Position:

491

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

65.7

40.2

Major BPS

52.1

0.05

1.3

41.8

Major PPT

84.3

0.77

0.7

76.2

32.4

Minor 5ss

37.4

-1.4

54.6

42.6

Minor BPS

37.1

-1.1

2.1

35.43

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009800

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010205

2190230 - 2195465

5236