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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2205822_2206288_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2205822 - 2206288
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CACTTTCGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
69.9
0.45
0.9
65.5
35.8
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
CFAP52
Ensembl Gene ID:
ENSAPLG00000009477
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030910
2205466 - 2222063
16598