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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_2206403_2213643_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2206403 - 2213643
Intron Length:
7241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTGTTTTAATC
Flanking Amino Acid:
EYGPKEKFSLGITALILLKT
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.9
36.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.3
0.68
0.8
73.8
36.9
Minor 5ss
36.2
-1.6
2.7
42.7
38.4
Minor BPS
65.3
0.46
1.3
69.9
36.2

Associated Gene:

Gene:
CFAP52
Ensembl Gene ID:
ENSAPLG00000009477
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030910
2205466 - 2222063
16598