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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_220680_223799_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
220680 - 223799
Intron Length:
3120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GTGGACTTGATT
Flanking Amino Acid:
WFEEMVTTTLELERLEVERV
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.8
33.3
Major BPS
75
0.62
1
65.3
41.5
Major PPT
91
0.92
0.6
89.3
19.4
Minor 5ss
42.3
-0.9
2.5
50.7
40.4
Minor BPS
53.3
0.18
1.7
68.42
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003204
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003294
191730 - 224740
33011